Edoardo Saccenti: search on Z-Library

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1

Determining the number of components in principal components analysis: A comparison of statistical, crossvalidation and approximated methods

Saccenti, Edoardo, Camacho, José

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

2015

Language:

english

File:

PDF, 19.97 MB

english, 2015

2

The Metabonomic Signature of Celiac Disease

Bertini, Ivano, Calabrò, Antonio, De Carli, Valeria, Luchinat, Claudio, Nepi, Stefano, Porfirio, Berardino, Renzi, Daniela, Saccenti, Edoardo, Tenori, Leonardo

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 316 KB

english, 2009

3

Multivariate modeling of the collaboration between Luigi Illica and Giuseppe Giacosa for the librettos of three operas by Giacomo Puccini

Saccenti, Edoardo, Tenori, Leonardo

Journal:

Digital Scholarship in the Humanities

Year:

2015

Language:

english

File:

PDF, 671 KB

english, 2015

4

Approaches to sample size determination for multivariate data: applications to PCA and PLS-DA of omics data

Saccenti, Edoardo, Timmerman, Marieke E.

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.91 MB

english, 2016

5

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

Atashgahi, Siavash, Aydin, Rozelin, Dimitrov, Mauricio R., Sipkema, Detmer, Hamonts, Kelly, Lahti, Leo, Maphosa, Farai, Kruse, Thomas, Saccenti, Edoardo, Springael, Dirk, Dejonghe, Winnie, Smidt, Hauk

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

6

Group-wise Principal Component Analysis for Exploratory Data Analysis

Camacho, José, Rodríguez-Gómez, Rafael A., Saccenti, Edoardo

Journal:

Journal of Computational and Graphical Statistics

Year:

2016

Language:

english

File:

PDF, 1.86 MB

english, 2016

7

Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine

Emwas, Abdul-Hamid, Saccenti, Edoardo, Gao, Xin, McKay, Ryan T., dos Santos, Vitor A. P. Martins, Roy, Raja, Wishart, David S.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.03 MB

english, 2018

8

Comparison of dimensionality assessment methods in Principal Component Analysis based on permutation tests

Vitale, Raffaele, Saccenti, Edoardo

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

2018

Language:

english

File:

PDF, 2.56 MB

english, 2018

9

NMR Spectroscopy for Metabolomics Research

Emwas, Abdul-Hamid, Roy, Raja, McKay, Ryan T., Tenori, Leonardo, Saccenti, Edoardo, Gowda, G. A. Nagana, Raftery, Daniel, Alahmari, Fatimah, Jaremko, Lukasz, Jaremko, Mariusz, Wishart, David S.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.71 MB

english, 2019

10

Tracy–Widom statistic for the largest eigenvalue of autoscaled real matrices

Edoardo Saccenti, Age K. Smilde, Johan A. Westerhuis, Margriet M. W. B. Hendriks

Journal:

Journal of Chemometrics

Year:

2011

Language:

english

File:

PDF, 297 KB

english, 2011

11

The war of tools: how can NMR spectroscopists detect errors in their structures?

Edoardo Saccenti, Antonio Rosato

Journal:

Journal of Biomolecular NMR

Year:

2008

Language:

english

File:

PDF, 330 KB

english, 2008

12

Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies

Ewa Szymańska, Edoardo Saccenti, Age K. Smilde, Johan A. Westerhuis

Journal:

Year:

2012

Language:

english

File:

PDF, 714 KB

english, 2012

13

Monomorphism of human cytochrome c

Ivano Bertini, Eva Grassi, Claudio Luchinat, Alessandro Quattrone, Edoardo Saccenti

Journal:

Year:

2006

Language:

english

File:

PDF, 105 KB

english, 2006

14

Reflections on univariate and multivariate analysis of metabolomics data

Saccenti, Edoardo, Hoefsloot, Huub C. J., Smilde, Age K., Westerhuis, Johan A., Hendriks, Margriet M. W. B.

Journal:

Year:

2014

Language:

english

File:

PDF, 580 KB

english, 2014

15

Individual Human Phenotypes in Metabolic Space and Time

Bernini, Patrizia, Bertini, Ivano, Luchinat, Claudio, Nepi, Stefano, Saccenti, Edoardo, Schäfer, Hartmut, Schütz, Birk, Spraul, Manfred, Tenori, Leonardo

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.37 MB

english, 2009

16

Probabilistic Networks of Blood Metabolites in Healthy Subjects As Indicators of Latent Cardiovascular Risk

Saccenti, Edoardo, Suarez-Diez, Maria, Luchinat, Claudio, Santucci, Claudio, Tenori, Leonardo

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.88 MB

english, 2015

17

A Metabolomic Perspective on Coeliac Disease

Calabrò, Antonio, Gralka, Ewa, Luchinat, Claudio, Saccenti, Edoardo, Tenori, Leonardo

Journal:

Autoimmune Diseases

Year:

2014

Language:

english

File:

PDF, 729 KB

english, 2014

18

Allostasis and Resilience of the Human Individual Metabolic Phenotype

Ghini, Veronica, Saccenti, Edoardo, Tenori, Leonardo, Assfalg, Michael, Luchinat, Claudio

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 3.85 MB

english, 2015

19

Hypothesis: The Sound of the Individual Metabolic Phenotype? Acoustic Detection of NMR Experiments

Cacciatore, Stefano, Saccenti, Edoardo, Piccioli, Mario

Journal:

Omics A Journal of Integrative Biology

Year:

2015

Language:

english

File:

PDF, 447 KB

english, 2015

20

Effects of sample size and dimensionality on the performance of four algorithms for inference of association networks in metabonomics

Suarez-Diez, Maria, Saccenti, Edoardo

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.36 MB

english, 2015

21

Covariances Simultaneous Component Analysis: a new method within a framework for modeling covariances

Smilde, Age K., Timmerman, Marieke E., Saccenti, Edoardo, Jansen, Jeroen J., Hoefsloot, Huub C. J.

Journal:

Journal of Chemometrics

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

22

On the use of the observation-wise k -fold operation in PCA cross-validation

Saccenti, Edoardo, Camacho, José

Journal:

Journal of Chemometrics

Year:

2015

Language:

english

File:

PDF, 3.88 MB

english, 2015

23

Weight loss predictability by plasma metabolic signatures in adults with obesity and morbid obesity of the DiOGenes study

Stroeve, Johanna H.M., Saccenti, Edoardo, Bouwman, Jildau, Dane, Adrie, Strassburg, Katrin, Vervoort, Jacques, Hankemeier, Thomas, Astrup, Arne, Smilde, Age K., van Ommen, Ben, Saris, Wim H.M.

Journal:

Year:

2016

Language:

english

File:

PDF, 404 KB

english, 2016

24

Entropy-Based Network Representation of the Individual Metabolic Phenotype

Saccenti, Edoardo, Menichetti, Giulia, Ghini, Veronica, Remondini, Daniel, Tenori, Leonardo, Luchinat, Claudio

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 6.13 MB

english, 2016

25

Read all about it!? Public accountability, fragmented global climate governance and the media

Karlsson-Vinkhuyzen, Sylvia I., Friberg, Lars, Saccenti, Edoardo

Journal:

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

26

Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

Atashgahi, Siavash, Lu, Yue, Zheng, Ying, Saccenti, Edoardo, Suarez-Diez, Maria, Ramiro-Garcia, Javier, Eisenmann, Heinrich, Elsner, Martin, Stams, Alfons J.M., Springael, Dirk, Dejonghe, Winnie, Smid

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 1.58 MB

english, 2016

27

Considering Horn’s Parallel Analysis from a Random Matrix Theory Point of View

Saccenti, Edoardo, Timmerman, Marieke E.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

28

Correlation patterns in experimental data are affected by normalization procedures: consequences for data analysis and network inference

Saccenti, Edoardo

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 2.88 MB

english, 2016

29

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

Koehorst, Jasper J., van Dam, Jesse C. J., van Heck, Ruben G. A., Saccenti, Edoardo, dos Santos, Vitor A. P. Martins, Suarez-Diez, Maria, Schaap, Peter J.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

30

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

Venkatasubramanian, Prashanna Balaji, Toydemir, Gamze, de Wit, Nicole, Saccenti, Edoardo, Martins dos Santos, Vitor A. P., van Baarlen, Peter, Wells, Jerry M., Suarez-Diez, Maria, Mes, Jurriaan J.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

31

Comparative transcriptomics reveal developmental turning points during embryogenesis of a hemimetabolous insect, the damselfly Ischnura elegans

Simon, Sabrina, Sagasser, Sven, Saccenti, Edoardo, Brugler, Mercer R., Schranz, M. Eric, Hadrys, Heike, Amato, George, DeSalle, Rob

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.13 MB

english, 2017

32

Age and sex effects on plasma metabolite association networks in healthy subjects

Vignoli, Alessia, Tenori, Leonardo, Luchinat, Claudio, Saccenti, Edoardo

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

33

Group-wise partial least square regression

Camacho, José, Saccenti, Edoardo

Journal:

Journal of Chemometrics

Year:

2017

Language:

english

File:

PDF, 983 KB

english, 2017

34

From correlation to causation: analysis of metabolomics data using systems biology approaches

Rosato, Antonio, Tenori, Leonardo, Cascante, Marta, De Atauri Carulla, Pedro Ramon, Martins dos Santos, Vitor A. P., Saccenti, Edoardo

Journal:

Year:

2018

Language:

english

File:

PDF, 2.02 MB

english, 2018

35

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

Koehorst, Jasper J, van Dam, Jesse C J, Saccenti, Edoardo, Martins dos Santos, Vitor A P, Suarez-Diez, Maria, Schaap, Peter J

Journal:

Year:

2018

Language:

english

File:

PDF, 206 KB

english, 2018

36

Group-wise ANOVA simultaneous component analysis for designed omics experiments

Saccenti, Edoardo, Smilde, Age K., Camacho, José

Journal:

Year:

2018

Language:

english

File:

PDF, 6.33 MB

english, 2018

37

Simplivariate Models: Uncovering the Underlying Biology in Functional Genomics Data

Saccenti, Edoardo, Westerhuis, Johan A., Smilde, Age K., van der Werf, Mariët J., Hageman, Jos A., Hendriks, Margriet M. W. B., Khodursky, Arkady B.

Journal:

Year:

2011

Language:

english

File:

PDF, 997 KB

english, 2011

38

Of Monkeys and Men: A Metabolomic Analysis of Static and Dynamic Urinary Metabolic Phenotypes in Two Species

Saccenti, Edoardo, Tenori, Leonardo, Verbruggen, Paul, Timmerman, Marieke E., Bouwman, Jildau, van der Greef, Jan, Luchinat, Claudio, Smilde, Age K., Oresic, Matej

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

39

Strategies for Individual Phenotyping of Linoleic and Arachidonic Acid Metabolism Using an Oral Glucose Tolerance Test

Saccenti, Edoardo, van Duynhoven, John, Jacobs, Doris M., Smilde, Age K., Hoefsloot, Huub C. J., Sladek, Frances M

Journal:

Year:

2015

Language:

english

File:

PDF, 780 KB

english, 2015

40

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J., Martins dos Santos, Vitor A. P., Schaap, Peter J., Zhou, Dongsheng

Journal:

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

41

Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen

van Lingen, Henk J., Edwards, Joan E., Vaidya, Jueeli D., van Gastelen, Sanne, Saccenti, Edoardo, van den Bogert, Bartholomeus, Bannink, André, Smidt, Hauke, Plugge, Caroline M., Dijkstra, Jan

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.76 MB

english, 2017

42

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows

Vaidya, Jueeli D., van den Bogert, Bartholomeus, Edwards, Joan E., Boekhorst, Jos, van Gastelen, Sanne, Saccenti, Edoardo, Plugge, Caroline M., Smidt, Hauke

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

43

Milk Metabolomics Data Reveal the Energy Balance of Individual Dairy Cows in Early Lactation

Xu, Wei, Vervoort, Jacques, Saccenti, Edoardo, van Hoeij, Renny, Kemp, Bas, van Knegsel, Ariette

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.77 MB

english, 2018

44

Semi-supervised Multivariate Statistical Network Monitoring for Learning Security Threats

Camacho, Jose, Macia-Fernandez, Gabriel, Fuentes-Garcia, Noemi Marta, Saccenti, Edoardo

Journal:

IEEE Transactions on Information Forensics and Security

Year:

2019

File:

PDF, 5 KB

2019

45

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

Pham, Nhung, van Heck, Ruben, van Dam, Jesse, Schaap, Peter, Saccenti, Edoardo, Suarez-Diez, Maria

Journal:

Year:

2019

File:

PDF, 4.61 MB

2019

46

Metabolomics in Systems Medicine: an overview of methods and applications

Karakitsou, Effrosyni, Foguet, Carles, de Atauri, Pedro, Kultima, Kim, Khoonsari, Payam Emami, Martins dos Santos, Vitor A.P., Saccenti, Edoardo, Rosato, Antonio, Cascante, Marta

Journal:

Current Opinion in Systems Biology

Year:

2019

File:

PDF, 2.28 MB

2019

47

Correlating Infant Faecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of One‐Month Old Breastfed Infants

Borewicz, Klaudyna, Gu, Fangjie, Saccenti, Edoardo, Arts, Ilja C.W., Penders, John, Thijs, Carel, Leeuwen, Sander S., Lindner, Cordula, Nauta, Arjen, Leusen, Ellen, Schols, Henk A., Smidt, Hauke

Journal:

Molecular Nutrition & Food Research

Year:

2019

Language:

english

File:

PDF, 1.58 MB

english, 2019

48

Correlating Infant Faecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of One‐Month Old Breastfed Infants

Borewicz, Klaudyna, Gu, Fangjie, Saccenti, Edoardo, Arts, Ilja C.W., Penders, John, Thijs, Carel, Leeuwen, Sander S., Lindner, Cordula, Nauta, Arjen, Leusen, Ellen, Schols, Henk A., Smidt, Hauke

Journal:

Molecular Nutrition & Food Research

Year:

2019

File:

PDF, 1.58 MB

2019

49

Patient’s characteristics and outcomes in necrotising soft-tissue infections: results from a Scandinavian, multicentre, prospective cohort study

Madsen, Martin Bruun, Skrede, Steinar, Perner, Anders, Arnell, Per, Nekludov, Michael, Bruun, Trond, Karlsson, Ylva, Hansen, Marco Bo, Polzik, Peter, Hedetoft, Morten, Rosén, Anders, Saccenti, Edoardo

Journal:

Intensive Care Medicine

Year:

2019

Language:

english

File:

PDF, 1.29 MB

english, 2019

50

Integrated univariate, multivariate and correlation-based network analyses reveal metabolite-specific effects on bacterial growth and biofilm formation in necrotizing soft tissue infections

AFZAL, MUHAMMAD, Saccenti, Edoardo, Madsen, Martin, Hansen, Marco Bo, Hyldegaard, Ole, Skrede, Steinar, martins dos santos, vitor, Norrby Teglund, Anna, Svensson, Mattias

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 1.88 MB

english, 2019